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PRPF18 pre-mRNA processing factor 18 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103527871, updated on 11-Mar-2024

Summary

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Gene symbol
PRPF18
Gene description
pre-mRNA processing factor 18
Locus tag
N300_00486
See related
EnsemblRapid:ENSCAAG00010011203
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 1 NC_044244.1 (7003891..7022054)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007619675.1 (17059832..17089716, complement)

Chromosome 1 - NC_044244.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115598964 Neighboring gene selenophosphate synthetase 1 Neighboring gene BEN domain containing 7 Neighboring gene FERM domain containing 4A Neighboring gene family with sequence similarity 107 member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in generation of catalytic spliceosome for second transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 18
Names
Pre-mRNA-splicing factor 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044244.1 Reference bCalAnn1_v1.p

    Range
    7003891..7022054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030468170.1 → XP_030324030.1  pre-mRNA-splicing factor 18 isoform X1

    UniProtKB/TrEMBL
    A0A091HYT7
    Related
    ENSCAAP00010015555.1, ENSCAAT00010016418.1
    Conserved Domains (2) summary
    smart00500
    Location:88 → 131
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:200 → 337
    Prp18; Prp18 domain

  2. XM_030468178.1 → XP_030324038.1  pre-mRNA-splicing factor 18 isoform X2

    UniProtKB/TrEMBL
    A0A091HYT7
    Related
    ENSCAAP00010015551.1, ENSCAAT00010016414.1
    Conserved Domains (2) summary
    smart00500
    Location:79 → 122
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    pfam02840
    Location:191 → 328
    Prp18; Prp18 domain
Nucleotide Protein
Heading Accession and Version

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