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TNFSF13B TNF superfamily member 13b [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103527442, updated on 11-Mar-2024

Summary

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Gene symbol
TNFSF13B
Gene description
TNF superfamily member 13b
See related
EnsemblRapid:ENSCAAG00010015479
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 1 NC_044244.1 (142041721..142052947, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007619668.1 (242166..253471, complement)

Chromosome 1 - NC_044244.1Genomic Context describing neighboring genes Neighboring gene insulin receptor substrate 2 Neighboring gene myosin XVI Neighboring gene abhydrolase domain containing 13 Neighboring gene DNA ligase 4 Neighboring gene NALCN channel auxiliary factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor ligand activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 13B
Names
Tumor necrosis factor ligand superfamily member 13B
tumor necrosis factor superfamily member 13b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044244.1 Reference bCalAnn1_v1.p

    Range
    142041721..142052947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008492632.1 → XP_008490854.1  tumor necrosis factor ligand superfamily member 13B

    See identical proteins and their annotated locations for XP_008490854.1

    UniProtKB/TrEMBL
    A0A091HVK7
    Related
    ENSCAAP00010021288.1, ENSCAAT00010022793.1
    Conserved Domains (1) summary
    cd00184
    Location:148 → 285
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
Nucleotide Protein
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