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KCMF1 potassium channel modulatory factor 1 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103527385, updated on 11-Mar-2024

Summary

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Gene symbol
KCMF1
Gene description
potassium channel modulatory factor 1
Locus tag
N300_02290
See related
EnsemblRapid:ENSCAAG00010011814
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Z
Exon count:
7
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) Z NC_044274.1 (54798569..54851024)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007619666.1 (2294854..2360754, complement)

Chromosome Z - NC_044274.1Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 10 Neighboring gene farnesyltransferase, CAAX box, subunit alpha Neighboring gene hook microtubule tethering protein 3 Neighboring gene ring finger protein 170

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in synaptic signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase KCMF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044274.1 Reference bCalAnn1_v1.p

    Range
    54798569..54851024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030467004.1 → XP_030322864.1  E3 ubiquitin-protein ligase KCMF1 isoform X2

    UniProtKB/TrEMBL
    A0A091HVH0
    Conserved Domains (1) summary
    pfam05605
    Location:21 → 80
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding

  2. XM_030467003.1 → XP_030322863.1  E3 ubiquitin-protein ligase KCMF1 isoform X1

    UniProtKB/TrEMBL
    A0A091HVH0
    Related
    ENSCAAP00010016341.1, ENSCAAT00010017319.1
    Conserved Domains (2) summary
    cd02338
    Location:7 → 55
    ZZ_PCMF_like; Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel ...
    pfam05605
    Location:77 → 136
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
Nucleotide Protein
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