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fgd4a FYVE, RhoGEF and PH domain containing 4a [ Poecilia reticulata (guppy) ]

Gene ID: 103481189, updated on 11-Mar-2024

Summary

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Gene symbol
fgd4a
Gene description
FYVE, RhoGEF and PH domain containing 4a
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
fgd4
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
21
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG19 NC_024349.1 (3646924..3703614, complement)

Linkage Group LG19 - NC_024349.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 205 Neighboring gene acylglycerol kinase Neighboring gene bicaudal D homolog 1a Neighboring gene aristaless-related homeobox protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024349.1 Chromosome LG19 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in filopodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FYVE, RhoGEF and PH domain-containing protein 4
Names
FYVE, RhoGEF and PH domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024349.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    3646924..3703614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008436503.2 → XP_008434725.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X1

    Conserved Domains (5) summary
    cd13236
    Location:736 → 835
    PH2_FGD1-4; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus
    cd15741
    Location:654 → 718
    FYVE_FGD1_2_4; FYVE domain found in FYVE, RhoGEF and PH domain-containing protein facio-genital dysplasia FGD1, FGD2, FGD4
    pfam00169
    Location:528 → 624
    PH; PH domain
    pfam00621
    Location:314 → 495
    RhoGEF; RhoGEF domain
    cl17171
    Location:527 → 620
    PH-like; Pleckstrin homology-like domain

  2. XM_017310852.1 → XP_017166341.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X7

    UniProtKB/TrEMBL
    A0A3P9Q9V5

  3. XM_017310851.1 → XP_017166340.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X2

  4. XM_008436507.2 → XP_008434729.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X5

    UniProtKB/TrEMBL
    A0A3P9Q9V5
    Conserved Domains (5) summary
    cd13236
    Location:715 → 814
    PH2_FGD1-4; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus
    cd15741
    Location:633 → 697
    FYVE_FGD1_2_4; FYVE domain found in FYVE, RhoGEF and PH domain-containing protein facio-genital dysplasia FGD1, FGD2, FGD4
    pfam00169
    Location:507 → 603
    PH; PH domain
    pfam00621
    Location:293 → 474
    RhoGEF; RhoGEF domain
    cl17171
    Location:506 → 599
    PH-like; Pleckstrin homology-like domain

  5. XM_008436504.2 → XP_008434726.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A3P9Q9V5
    Conserved Domains (5) summary
    cd13236
    Location:727 → 826
    PH2_FGD1-4; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus
    cd15741
    Location:645 → 709
    FYVE_FGD1_2_4; FYVE domain found in FYVE, RhoGEF and PH domain-containing protein facio-genital dysplasia FGD1, FGD2, FGD4
    pfam00169
    Location:519 → 615
    PH; PH domain
    pfam00621
    Location:305 → 486
    RhoGEF; RhoGEF domain
    cl17171
    Location:518 → 611
    PH-like; Pleckstrin homology-like domain

  6. XM_008436506.2 → XP_008434728.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A3P9Q9V5
    Conserved Domains (5) summary
    cd13236
    Location:723 → 822
    PH2_FGD1-4; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus
    cd15741
    Location:641 → 705
    FYVE_FGD1_2_4; FYVE domain found in FYVE, RhoGEF and PH domain-containing protein facio-genital dysplasia FGD1, FGD2, FGD4
    pfam00169
    Location:515 → 611
    PH; PH domain
    pfam00621
    Location:301 → 482
    RhoGEF; RhoGEF domain
    cl17171
    Location:514 → 607
    PH-like; Pleckstrin homology-like domain

  7. XM_008436508.2 → XP_008434730.1  FYVE, RhoGEF and PH domain-containing protein 4 isoform X6

    UniProtKB/TrEMBL
    A0A3P9Q9V5
    Conserved Domains (5) summary
    cd13236
    Location:714 → 813
    PH2_FGD1-4; FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus
    cd15741
    Location:632 → 696
    FYVE_FGD1_2_4; FYVE domain found in FYVE, RhoGEF and PH domain-containing protein facio-genital dysplasia FGD1, FGD2, FGD4
    pfam00169
    Location:506 → 602
    PH; PH domain
    pfam00621
    Location:292 → 473
    RhoGEF; RhoGEF domain
    cl17171
    Location:505 → 598
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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