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osr2 odd-skipped related transciption factor 2 [ Poecilia reticulata (guppy) ]

Gene ID: 103478824, updated on 11-Mar-2024

Summary

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Gene symbol
osr2
Gene description
odd-skipped related transciption factor 2
See related
Ensembl:ENSPREG00000020911
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG16
Exon count:
4
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG16 NC_024346.1 (32983823..32988196, complement)

Linkage Group LG16 - NC_024346.1Genomic Context describing neighboring genes Neighboring gene F-box protein 43 Neighboring gene regulator of G protein signaling 22 Neighboring gene vacuolar protein sorting 13 homolog B Neighboring gene general transcription factor II-I repeat domain-containing protein 2-like Neighboring gene uncharacterized LOC108167022

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024346.1 Chromosome LG16 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryo development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in urogenital system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein odd-skipped-related 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024346.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    32983823..32988196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008432887.2 → XP_008431109.1  protein odd-skipped-related 2 isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:193 → 249
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:171 → 191
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:169 → 191
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:183 → 208
    zf-H2C2_2; Zinc-finger double domain

  2. XM_008432886.2 → XP_008431108.1  protein odd-skipped-related 2 isoform X1

    UniProtKB/TrEMBL
    A0A3P9QA26
    Related
    ENSPREP00000030884.1, ENSPRET00000031236.1
    Conserved Domains (4) summary
    COG5048
    Location:169 → 306
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:171 → 191
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:253 → 275
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:183 → 208
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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