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dennd4b DENN domain containing 4B [ Poecilia reticulata (guppy) ]

Gene ID: 103477481, updated on 9-Nov-2023

Summary

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Gene symbol
dennd4b
Gene description
DENN domain containing 4B
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: LG16
Exon count:
27
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG16 NC_024346.1 (531892..556173, complement)

Linkage Group LG16 - NC_024346.1Genomic Context describing neighboring genes Neighboring gene asteroid homolog 1a Neighboring gene aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase) Neighboring gene KIAA0319 ortholog Neighboring gene CREB regulated transcription coactivator 2 Neighboring gene protein asteroid homolog 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024346.1 Chromosome LG16 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: DENN domain-containing protein 4B
Names
DENN/MADD domain containing 4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024346.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    531892..556173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008430618.2 → XP_008428840.1  LOW QUALITY PROTEIN: DENN domain-containing protein 4B

    Conserved Domains (4) summary
    smart00801
    Location:641 → 714
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:276 → 358
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    pfam02141
    Location:391 → 575
    DENN; DENN (AEX-3) domain
    pfam16106
    Location:1381 → 1437
    DUF4824; Domain of unknown function (DUF4824)
Nucleotide Protein
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