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tcf19l transcription factor 19 (SC1), like [ Poecilia reticulata (guppy) ]

Gene ID: 103472952, updated on 11-Mar-2024

Summary

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Gene symbol
tcf19l
Gene description
transcription factor 19 (SC1), like
See related
Ensembl:ENSPREG00000007405
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
tcf19
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
6
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG11 NC_024341.1 (26985278..26996561, complement)

Linkage Group LG11 - NC_024341.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103472955 Neighboring gene PVR cell adhesion molecule related 2 like Neighboring gene uncharacterized LOC103472956 Neighboring gene uncharacterized LOC103472954 Neighboring gene uncharacterized LOC103472979 Neighboring gene tubulin beta chain-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024341.1 Chromosome LG11 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024341.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    26985278..26996561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008422832.2 → XP_008421054.1  transcription factor 19 isoform X2

    Conserved Domains (3) summary
    COG1716
    Location:32 → 124
    FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
    cd00060
    Location:11 → 136
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cd15609
    Location:498 → 548
    PHD_TCF19; PHD finger found in Transcription factor 19 (TCF-19) and similar proteins

  2. XM_008422831.2 → XP_008421053.1  transcription factor 19 isoform X1

    UniProtKB/TrEMBL
    A0A3P9NMN5
    Related
    ENSPREP00000010831.1, ENSPRET00000010957.1
    Conserved Domains (3) summary
    COG1716
    Location:32 → 124
    FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
    cd00060
    Location:11 → 136
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    cd15609
    Location:507 → 557
    PHD_TCF19; PHD finger found in Transcription factor 19 (TCF-19) and similar proteins
Nucleotide Protein
Heading Accession and Version

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