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efnb1 ephrin-B1 [ Poecilia reticulata (guppy) ]

Gene ID: 103470907, updated on 11-Mar-2024

Summary

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Gene symbol
efnb1
Gene description
ephrin-B1
See related
Ensembl:ENSPREG00000021139
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG10
Exon count:
11
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG10 NC_024340.1 (3881565..3984839)

Linkage Group LG10 - NC_024340.1Genomic Context describing neighboring genes Neighboring gene STAG2 cohesin complex component b Neighboring gene X-linked inhibitor of apoptosis Neighboring gene uncharacterized LOC103470909 Neighboring gene uncharacterized LOC103470913 Neighboring gene androgen receptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024340.1 Chromosome LG10 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ephrin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ephrin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin-B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024340.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    3881565..3984839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008419611.2 → XP_008417833.1  ephrin-B1 isoform X4

    See identical proteins and their annotated locations for XP_008417833.1

    Conserved Domains (1) summary
    cl19115
    Location:24 → 145
    Cupredoxin; Cupredoxin superfamily

  2. XM_008419610.2 → XP_008417832.1  ephrin-B1 isoform X4

    See identical proteins and their annotated locations for XP_008417832.1

    Conserved Domains (1) summary
    cl19115
    Location:24 → 145
    Cupredoxin; Cupredoxin superfamily

  3. XM_008419612.2 → XP_008417834.1  ephrin-B1 isoform X4

    See identical proteins and their annotated locations for XP_008417834.1

    Conserved Domains (1) summary
    cl19115
    Location:24 → 145
    Cupredoxin; Cupredoxin superfamily

  4. XM_008419613.1 → XP_008417835.1  ephrin-B1 isoform X5

    Conserved Domains (1) summary
    cl19115
    Location:10 → 131
    Cupredoxin; Cupredoxin superfamily

  5. XM_008419608.2 → XP_008417830.1  ephrin-B1 isoform X2

    Conserved Domains (1) summary
    cl19115
    Location:57 → 183
    Cupredoxin; Cupredoxin superfamily

  6. XM_008419609.2 → XP_008417831.1  ephrin-B1 isoform X3

    Conserved Domains (1) summary
    cl19115
    Location:32 → 158
    Cupredoxin; Cupredoxin superfamily

  7. XM_008419606.2 → XP_008417828.1  ephrin-B1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9QAM0
    Related
    ENSPREP00000031206.1, ENSPRET00000031564.1
    Conserved Domains (1) summary
    cl19115
    Location:70 → 204
    Cupredoxin; Cupredoxin superfamily
Nucleotide Protein
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