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nfixb nuclear factor I/Xb [ Poecilia reticulata (guppy) ]

Gene ID: 103468322, updated on 11-Mar-2024

Summary

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Gene symbol
nfixb
Gene description
nuclear factor I/Xb
See related
Ensembl:ENSPREG00000012965
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
nfix
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
18
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG8 NC_024338.1 (5399864..5595166, complement)

Linkage Group LG8 - NC_024338.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 13b Neighboring gene RAD23 homolog A, nucleotide excision repair protein Neighboring gene tetratricopeptide repeat protein 39A-like Neighboring gene growth arrest and DNA-damage-inducible, gamma interacting protein 1 Neighboring gene tetratricopeptide repeat protein 39A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024338.1 Chromosome LG8 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 X-type
Names
nuclear factor I X
nuclear factor I/X (CCAAT-binding transcription factor)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024338.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    5399864..5595166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008415318.2 → XP_008413540.1  nuclear factor 1 X-type isoform X9

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Related
    ENSPREP00000019172.1, ENSPRET00000019378.1
    Conserved Domains (3) summary
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:68 → 172
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:214 → 533
    CTF_NFI; CTF/NF-I family transcription modulation region

  2. XM_008415315.2 → XP_008413537.1  nuclear factor 1 X-type isoform X6

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    pfam10524
    Location:22 → 58
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:80 → 184
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:226 → 545
    CTF_NFI; CTF/NF-I family transcription modulation region

  3. XM_008415322.2 → XP_008413544.1  nuclear factor 1 X-type isoform X11

    See identical proteins and their annotated locations for XP_008413544.1

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    pfam10524
    Location:2 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:60 → 164
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:206 → 525
    CTF_NFI; CTF/NF-I family transcription modulation region

  4. XM_008415317.2 → XP_008413539.1  nuclear factor 1 X-type isoform X8

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 542
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  5. XM_008415314.2 → XP_008413536.1  nuclear factor 1 X-type isoform X5

    UniProtKB/TrEMBL
    A0A3P9PBJ1, A0A3P9PC12
    Related
    ENSPREP00000019238.1, ENSPRET00000019445.1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 554
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  6. XM_008415311.2 → XP_008413533.1  nuclear factor 1 X-type isoform X3

    UniProtKB/TrEMBL
    A0A3P9PBJ1, A0A3P9PBY4
    Related
    ENSPREP00000019208.1, ENSPRET00000019414.1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 567
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  7. XM_008415327.2 → XP_008413549.1  nuclear factor 1 X-type isoform X15

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 511
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  8. XM_008415308.2 → XP_008413530.1  nuclear factor 1 X-type isoform X1

    UniProtKB/TrEMBL
    A0A3P9PBJ1, A0A3P9PBK7
    Related
    ENSPREP00000019189.1, ENSPRET00000019395.1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 579
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  9. XM_008415329.2 → XP_008413551.1  nuclear factor 1 X-type isoform X16

    UniProtKB/TrEMBL
    A0A3P9PBY9
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 458
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  10. XM_008415323.2 → XP_008413545.1  nuclear factor 1 X-type isoform X13

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 524
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  11. XM_008415320.2 → XP_008413542.1  nuclear factor 1 X-type isoform X10

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 536
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  12. XM_008415325.2 → XP_008413547.1  nuclear factor 1 X-type isoform X14

    UniProtKB/TrEMBL
    A0A3P9PBY9
    Related
    ENSPREP00000019327.1, ENSPRET00000019532.1
    Conserved Domains (3) summary
    cl00055
    Location:107 → 211
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:253 → 495
    CTF_NFI; CTF/NF-I family transcription modulation region
    pfam10524
    Location:48 → 85
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus

  13. XM_008415321.2 → XP_008413543.1  nuclear factor 1 X-type isoform X12

    See identical proteins and their annotated locations for XP_008413543.1

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    pfam10524
    Location:2 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:60 → 164
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:206 → 525
    CTF_NFI; CTF/NF-I family transcription modulation region

  14. XM_008415331.2 → XP_008413553.1  nuclear factor 1 X-type isoform X17

    UniProtKB/TrEMBL
    A0A3P9PBY9
    Related
    ENSPREP00000019267.1, ENSPRET00000019473.1
    Conserved Domains (3) summary
    pfam10524
    Location:29 → 66
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:88 → 192
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:234 → 464
    CTF_NFI; CTF/NF-I family transcription modulation region

  15. XM_008415316.2 → XP_008413538.1  nuclear factor 1 X-type isoform X7

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    pfam10524
    Location:29 → 66
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:88 → 192
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:234 → 541
    CTF_NFI; CTF/NF-I family transcription modulation region

  16. XM_008415312.2 → XP_008413534.1  nuclear factor 1 X-type isoform X4

    UniProtKB/TrEMBL
    A0A3P9PBG6, A0A3P9PBJ1
    Related
    ENSPREP00000019152.1, ENSPRET00000019358.1
    Conserved Domains (3) summary
    pfam10524
    Location:29 → 66
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:88 → 192
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:234 → 553
    CTF_NFI; CTF/NF-I family transcription modulation region

  17. XM_008415310.2 → XP_008413532.1  nuclear factor 1 X-type isoform X2

    UniProtKB/TrEMBL
    A0A3P9PBJ1
    Conserved Domains (3) summary
    pfam10524
    Location:42 → 78
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:100 → 204
    MH1; N-terminal Mad Homology 1 (MH1) domain
    pfam00859
    Location:246 → 565
    CTF_NFI; CTF/NF-I family transcription modulation region
Nucleotide Protein
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