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ppl periplakin [ Poecilia reticulata (guppy) ]

Gene ID: 103468280, updated on 11-Mar-2024

Summary

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Gene symbol
ppl
Gene description
periplakin
See related
Ensembl:ENSPREG00000011553
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See ppl in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
23
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG8 NC_024338.1 (4256100..4278085, complement)

Linkage Group LG8 - NC_024338.1Genomic Context describing neighboring genes Neighboring gene rogdi atypical leucine zipper Neighboring gene glyoxylate reductase 1 homolog (Arabidopsis) Neighboring gene syntaxin-binding protein 4-like Neighboring gene perlucin-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024338.1 Chromosome LG8 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
periplakin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024338.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    4256100..4278085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008415238.2 → XP_008413460.1  periplakin isoform X4

    Conserved Domains (4) summary
    COG0419
    Location:602 → 1183
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:900 → 1657
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl02488
    Location:215 → 407
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl19950
    Location:1518 → 1668
    Sec3_C; Exocyst complex component Sec3

  2. XM_008415237.2 → XP_008413459.1  periplakin isoform X3

    UniProtKB/TrEMBL
    A0A3P9P5K6
    Related
    ENSPREP00000017097.1, ENSPRET00000017278.1
    Conserved Domains (4) summary
    COG0419
    Location:603 → 1184
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:901 → 1658
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl02488
    Location:215 → 407
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl19950
    Location:1519 → 1669
    Sec3_C; Exocyst complex component Sec3

  3. XM_008415236.2 → XP_008413458.1  periplakin isoform X2

    Conserved Domains (4) summary
    COG0419
    Location:614 → 1195
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:912 → 1669
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl02488
    Location:215 → 407
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl19950
    Location:1530 → 1680
    Sec3_C; Exocyst complex component Sec3

  4. XM_008415235.2 → XP_008413457.1  periplakin isoform X1

    UniProtKB/TrEMBL
    A0A3P9P5T5
    Related
    ENSPREP00000017073.1, ENSPRET00000017254.1
    Conserved Domains (4) summary
    COG0419
    Location:615 → 1196
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:913 → 1670
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl02488
    Location:215 → 407
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cl19950
    Location:1531 → 1681
    Sec3_C; Exocyst complex component Sec3
Nucleotide Protein
Heading Accession and Version

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