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xrcc5 X-ray repair complementing defective repair in Chinese hamster cells 5 [ Poecilia reticulata (guppy) ]

Gene ID: 103461656, updated on 11-Mar-2024

Summary

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Gene symbol
xrcc5
Gene description
X-ray repair complementing defective repair in Chinese hamster cells 5
See related
Ensembl:ENSPREG00000009711
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG2
Exon count:
19
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG2 NC_024332.1 (33625616..33638594, complement)

Linkage Group LG2 - NC_024332.1Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 4b Neighboring gene collagen alpha-2(VI) chain-like Neighboring gene uncharacterized LOC103461652 Neighboring gene transmembrane protein 169b Neighboring gene phosphofructokinase, liver a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024332.1 Chromosome LG2 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to X-ray IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to gamma radiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ku70:Ku80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: X-ray repair cross-complementing protein 5
Names
X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
X-ray repair cross complementing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024332.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    33625616..33638594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008403944.1 → XP_008402166.1  LOW QUALITY PROTEIN: X-ray repair cross-complementing protein 5

    UniProtKB/TrEMBL
    A0A3P9NY38
    Related
    ENSPREP00000014485.1, ENSPRET00000014631.1
    Conserved Domains (3) summary
    cd00873
    Location:238 → 533
    KU80; Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the ...
    pfam08785
    Location:581 → 693
    Ku_PK_bind; Ku C terminal domain like
    cl00057
    Location:7 → 238
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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