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gramd1c GRAM domain containing 1c [ Poecilia reticulata (guppy) ]

Gene ID: 103456645, updated on 11-Mar-2024

Summary

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Gene symbol
gramd1c
Gene description
GRAM domain containing 1c
See related
Ensembl:ENSPREG00000018899
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG20
Exon count:
18
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG20 NC_024350.1 (14402677..14415120, complement)

Linkage Group LG20 - NC_024350.1Genomic Context describing neighboring genes Neighboring gene queuine tRNA-ribosyltransferase accessory subunit 2 Neighboring gene coiled-coil domain containing 191 Neighboring gene zinc finger DHHC-type palmitoyltransferase 23b Neighboring gene ATPase H+ transporting V1 subunit Ab Neighboring gene N-alpha-acetyltransferase 50, NatE catalytic subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024350.1 Chromosome LG20 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sterol transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular sterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-plasma membrane contact site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GRAM domain-containing protein 1C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024350.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    14402677..14415120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008396322.2 → XP_008394544.1  GRAM domain-containing protein 1C

    See identical proteins and their annotated locations for XP_008394544.1

    UniProtKB/TrEMBL
    A0A3P9Q1B5
    Conserved Domains (2) summary
    cd13220
    Location:67 → 159
    PH-GRAM_GRAMDC; GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    pfam16016
    Location:326 → 472
    DUF4782; Domain of unknown function (DUF4782)

  2. XM_008396321.2 → XP_008394543.1  GRAM domain-containing protein 1C

    See identical proteins and their annotated locations for XP_008394543.1

    UniProtKB/TrEMBL
    A0A3P9Q1B5
    Related
    ENSPREP00000027927.1, ENSPRET00000028234.1
    Conserved Domains (2) summary
    cd13220
    Location:67 → 159
    PH-GRAM_GRAMDC; GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
    pfam16016
    Location:326 → 472
    DUF4782; Domain of unknown function (DUF4782)
Nucleotide Protein
Heading Accession and Version

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