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gpbp1l1 GC-rich promoter binding protein 1-like 1 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103395821, updated on 11-Mar-2024

Summary

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Gene symbol
gpbp1l1
Gene description
GC-rich promoter binding protein 1-like 1
See related
Ensembl:ENSCSEG00000010334
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 20 NC_024326.1 (297792..307118)

Chromosome 20 - NC_024326.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 3-kinase regulatory subunit gamma-like Neighboring gene uncharacterized LOC103395816 Neighboring gene transmembrane protein 69 Neighboring gene intracisternal A particle-promoted polypeptide Neighboring gene histone-binding protein N1/N2 Neighboring gene peroxiredoxin 1 Neighboring gene zebrafish testis-expressed 38

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024326.1 Chromosome 20 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vasculin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024326.1 Reference Cse_v1.0 Primary Assembly

    Range
    297792..307118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008333617.3 → XP_008331839.1  vasculin-like protein 1

    See identical proteins and their annotated locations for XP_008331839.1

    UniProtKB/TrEMBL
    A0A3P8VUH6
    Related
    ENSCSEP00000016055.1, ENSCSET00000016261.1
    Conserved Domains (1) summary
    pfam15337
    Location:396 → 473
    Vasculin; Vascular protein family Vasculin-like 1

  2. XM_008333616.3 → XP_008331838.1  vasculin-like protein 1

    See identical proteins and their annotated locations for XP_008331838.1

    UniProtKB/TrEMBL
    A0A3P8VUH6
    Conserved Domains (1) summary
    pfam15337
    Location:396 → 473
    Vasculin; Vascular protein family Vasculin-like 1
Nucleotide Protein
Heading Accession and Version

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