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rabgef1 RAB guanine nucleotide exchange factor (GEF) 1 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103394923, updated on 11-Mar-2024

Summary

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Gene symbol
rabgef1
Gene description
RAB guanine nucleotide exchange factor (GEF) 1
See related
Ensembl:ENSCSEG00000016286
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
zebrafish all
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Genomic context

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See rabgef1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 19 NC_024325.1 (4240542..4246284)

Chromosome 19 - NC_024325.1Genomic Context describing neighboring genes Neighboring gene glucuronidase, beta Neighboring gene tetratricopeptide repeat domain 3 Neighboring gene uncharacterized LOC112488607 Neighboring gene G protein-activated inward rectifier potassium channel 2-like Neighboring gene potassium channel tetramerization domain containing 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024325.1 Chromosome 19 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rab5 GDP/GTP exchange factor
Names
RAB guanine nucleotide exchange factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024325.1 Reference Cse_v1.0 Primary Assembly

    Range
    4240542..4246284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025065496.1 → XP_024921264.1  rab5 GDP/GTP exchange factor

    UniProtKB/TrEMBL
    A0A3P8WLI0
    Related
    ENSCSEP00000025510.1, ENSCSET00000025847.1
    Conserved Domains (2) summary
    pfam01754
    Location:17 → 40
    zf-A20; A20-like zinc finger
    pfam02204
    Location:283 → 383
    VPS9; Vacuolar sorting protein 9 (VPS9) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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