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abat 4-aminobutyrate aminotransferase [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103393512, updated on 11-Mar-2024

Summary

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Gene symbol
abat
Gene description
4-aminobutyrate aminotransferase
See related
Ensembl:ENSCSEG00000011618
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 17 NC_024323.1 (13669814..13676958)

Chromosome 17 - NC_024323.1Genomic Context describing neighboring genes Neighboring gene hydroxyacid oxidase (glycolate oxidase) 1 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene methyltransferase 22, Kin17 lysine Neighboring gene protein arginine methyltransferase 1 Neighboring gene transient receptor potential cation channel, subfamily M, member 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024323.1 Chromosome 17 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-aminobutyrate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gamma-aminobutyric acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-aminobutyrate aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024323.1 Reference Cse_v1.0 Primary Assembly

    Range
    13669814..13676958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008330509.3 → XP_008328731.1  4-aminobutyrate aminotransferase, mitochondrial

    UniProtKB/TrEMBL
    A0A3P8VSI5, A0A3P8VV85
    Related
    ENSCSEP00000018242.1, ENSCSET00000018467.1
    Conserved Domains (2) summary
    COG0160
    Location:42 → 498
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    cl18945
    Location:38 → 496
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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