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slitrk4 SLIT and NTRK-like family, member 4 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103390500, updated on 11-Mar-2024

Summary

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Gene symbol
slitrk4
Gene description
SLIT and NTRK-like family, member 4
See related
Ensembl:ENSCSEG00000001931
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 15 NC_024321.1 (282868..289782)

Chromosome 15 - NC_024321.1Genomic Context describing neighboring genes Neighboring gene dynein regulatory complex subunit 4-like Neighboring gene aquaporin-1-like Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene diaphanous-related formin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024321.1 Chromosome 15 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SLIT and NTRK-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024321.1 Reference Cse_v1.0 Primary Assembly

    Range
    282868..289782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025063474.1 → XP_024919242.1  SLIT and NTRK-like protein 4 isoform X2

    Conserved Domains (5) summary
    TIGR00864
    Location:515 → 576
    PCC; polycystin cation channel protein
    smart00082
    Location:232 → 272
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:80 → 103
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:106 → 162
    LRR_8; Leucine rich repeat
    cl26793
    Location:358 → 450
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

  2. XM_025063473.1 → XP_024919241.1  SLIT and NTRK-like protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A3P8UM64
    Related
    ENSCSEP00000002931.1, ENSCSET00000002975.1
    Conserved Domains (5) summary
    TIGR00864
    Location:530 → 591
    PCC; polycystin cation channel protein
    smart00082
    Location:247 → 287
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:95 → 118
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:121 → 177
    LRR_8; Leucine rich repeat
    cl26793
    Location:373 → 465
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
Nucleotide Protein
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