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atg3 autophagy related 3 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103389583, updated on 11-Mar-2024

Summary

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Gene symbol
atg3
Gene description
autophagy related 3
See related
Ensembl:ENSCSEG00000005972
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 14 NC_024320.1 (11291656..11297612, complement)

Chromosome 14 - NC_024320.1Genomic Context describing neighboring genes Neighboring gene homeodomain-interacting protein kinase 1-like Neighboring gene homeodomain-interacting protein kinase 1-like Neighboring gene solute carrier family 19 member 2 Neighboring gene cysteinyl-tRNA synthetase 2, mitochondrial Neighboring gene DDRGK domain containing 1 Neighboring gene sodium/potassium-transporting ATPase subunit beta-233-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024320.1 Chromosome 14 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024320.1 Reference Cse_v1.0 Primary Assembly

    Range
    11291656..11297612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008325042.3 → XP_008323264.1  ubiquitin-like-conjugating enzyme ATG3 isoform X2

    Conserved Domains (3) summary
    pfam03986
    Location:8 → 119
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:195 → 256
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:277 → 300
    Autophagy_C; Autophagocytosis associated protein C-terminal

  2. XM_008325040.3 → XP_008323262.1  ubiquitin-like-conjugating enzyme ATG3 isoform X1

    UniProtKB/TrEMBL
    A0A3P8VA53
    Related
    ENSCSEP00000009310.1, ENSCSET00000009419.1
    Conserved Domains (3) summary
    pfam03986
    Location:8 → 133
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:209 → 270
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    pfam10381
    Location:291 → 314
    Autophagy_C; Autophagocytosis associated protein C-terminal
Nucleotide Protein
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