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clstn1 calsyntenin 1 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103385039, updated on 11-Mar-2024

Summary

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Gene symbol
clstn1
Gene description
calsyntenin 1
See related
Ensembl:ENSCSEG00000006340
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 10
Exon count:
19
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 10 NC_024316.1 (11800114..11825102, complement)

Chromosome 10 - NC_024316.1Genomic Context describing neighboring genes Neighboring gene nicotinamide nucleotide adenylyltransferase 1 Neighboring gene leucine zipper and CTNNBIP1 domain containing Neighboring gene catenin, beta interacting protein 1 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024316.1 Chromosome 10 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024316.1 Reference Cse_v1.0 Primary Assembly

    Range
    11800114..11825102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008318797.3 → XP_008317019.1  calsyntenin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3P8V6Z7
    Conserved Domains (1) summary
    cd11304
    Location:38 → 146
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_008318795.3 → XP_008317017.1  calsyntenin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3P8V6Z7, A0A3P8V9G5
    Related
    ENSCSEP00000009886.1, ENSCSET00000009998.1
    Conserved Domains (1) summary
    cd11304
    Location:38 → 146
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_008318796.3 → XP_008317018.1  calsyntenin-1 isoform X3

    UniProtKB/TrEMBL
    A0A3P8V6Z7, A0A3P8V714
    Related
    ENSCSEP00000009899.1, ENSCSET00000010013.1
    Conserved Domains (1) summary
    cd11304
    Location:165 → 255
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_008318794.3 → XP_008317016.1  calsyntenin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3P8V6Z7
    Related
    ENSCSEP00000009879.1, ENSCSET00000009993.1
    Conserved Domains (1) summary
    cd11304
    Location:165 → 255
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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