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zic3 zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila) [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103376527, updated on 11-Mar-2024

Summary

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Gene symbol
zic3
Gene description
zic family member 3 heterotaxy 1 (odd-paired homolog, Drosophila)
See related
Ensembl:ENSSPAG00000008467
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577733.1 (189874..192645)

NW_007577733.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 13a Neighboring gene zic family member 6 Neighboring gene G protein-coupled receptor 101 Neighboring gene transmembrane 9 superfamily protein member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007577733 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ZIC 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007577733.1 Reference Stegastes_partitus-1.0.2

    Range
    189874..192645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008306922.1 → XP_008305144.1  zinc finger protein ZIC 3

    UniProtKB/TrEMBL
    A0A3B4ZYK4, A0A9Y4NX27
    Related
    ENSSPAP00000011129.1, ENSSPAT00000011325.1
    Conserved Domains (3) summary
    sd00017
    Location:279 → 299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:365 → 387
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:321 → 348
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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