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pnpt1 polyribonucleotide nucleotidyltransferase 1 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103376083, updated on 11-Mar-2024

Summary

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Gene symbol
pnpt1
Gene description
polyribonucleotide nucleotidyltransferase 1
See related
Ensembl:ENSSPAG00000016880
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007581391.1 (41286..50288)

NW_007581391.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 88A Neighboring gene protein phosphatase 4 regulatory subunit 3B Neighboring gene uncharacterized LOC103376085

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007581391 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyribonucleotide nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyribonucleotide nucleotidyltransferase 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007581391.1 Reference Stegastes_partitus-1.0.2

    Range
    41286..50288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008306445.1 → XP_008304667.1  polyribonucleotide nucleotidyltransferase 1, mitochondrial

    UniProtKB/TrEMBL
    A0A3B5B9I5, A0A3B5B9M7
    Related
    ENSSPAP00000022417.1, ENSSPAT00000022772.1
    Conserved Domains (6) summary
    cd11363
    Location:35 → 259
    RNase_PH_PNPase_1; Polyribonucleotide nucleotidyltransferase, repeat 1
    cd11364
    Location:353 → 583
    RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
    PRK11824
    Location:35 → 739
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
    pfam03726
    Location:268 → 349
    PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
    cl00098
    Location:592 → 652
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cl09927
    Location:666 → 736
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
Nucleotide Protein
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