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sp3a sp3a transcription factor [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103369958, updated on 11-Mar-2024

Summary

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Gene symbol
sp3a
Gene description
sp3a transcription factor
See related
Ensembl:ENSSPAG00000000481
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Also known as
sp3
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007579084.1 (128438..141386)

NW_007579084.1Genomic Context describing neighboring genes Neighboring gene sp9 transcription factor Neighboring gene Obg like ATPase 1 Neighboring gene mitogen-activated protein kinase kinase kinase MLT-like Neighboring gene cell division cycle associated 7a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007579084 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp3
Names
Sp3 transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007579084.1 Reference Stegastes_partitus-1.0.2

    Range
    128438..141386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008298825.1 → XP_008297047.1  transcription factor Sp3 isoform X1

    UniProtKB/TrEMBL
    A0A3B4Z098
    Related
    ENSSPAP00000000606.1, ENSSPAT00000000614.1
    Conserved Domains (5) summary
    COG5048
    Location:568 → 659
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:555 → 577
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:613 → 635
    zf-C2H2; Zinc finger, C2H2 type
    pfam03153
    Location:288 → 488
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam13465
    Location:599 → 622
    zf-H2C2_2; Zinc-finger double domain

  2. XM_008298826.1 → XP_008297048.1  transcription factor Sp3 isoform X2

    UniProtKB/TrEMBL
    A0A9Y4NGW0
    Conserved Domains (5) summary
    COG5048
    Location:565 → 656
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:552 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:610 → 632
    zf-C2H2; Zinc finger, C2H2 type
    pfam03153
    Location:288 → 488
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam13465
    Location:596 → 619
    zf-H2C2_2; Zinc-finger double domain

  3. XM_008298827.1 → XP_008297049.1  transcription factor Sp3 isoform X3

    UniProtKB/TrEMBL
    A0A3B4Z0B8
    Related
    ENSSPAP00000000621.1, ENSSPAT00000000629.1
    Conserved Domains (5) summary
    COG5048
    Location:536 → 627
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:523 → 545
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:581 → 603
    zf-C2H2; Zinc finger, C2H2 type
    pfam03153
    Location:256 → 456
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam13465
    Location:567 → 590
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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