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cnot6l CCR4-NOT transcription complex, subunit 6-like [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103368228, updated on 11-Mar-2024

Summary

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Gene symbol
cnot6l
Gene description
CCR4-NOT transcription complex, subunit 6-like
See related
Ensembl:ENSSPAG00000022932
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578864.1 (233662..263439)

NW_007578864.1Genomic Context describing neighboring genes Neighboring gene extracellular matrix protein FRAS1-like Neighboring gene mitochondrial ribosomal protein L1 Neighboring gene C-X-C motif chemokine 13-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578864 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578864.1 Reference Stegastes_partitus-1.0.2

    Range
    233662..263439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008296528.1 → XP_008294750.1  CCR4-NOT transcription complex subunit 6-like

    See identical proteins and their annotated locations for XP_008294750.1

    UniProtKB/TrEMBL
    A0A3B5BCC5
    Related
    ENSSPAP00000030583.1, ENSSPAT00000031059.1
    Conserved Domains (4) summary
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:51 → 91
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:51 → 132
    LRR_8; Leucine rich repeat
    cl00490
    Location:186 → 530
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily

  2. XM_008296529.1 → XP_008294751.1  CCR4-NOT transcription complex subunit 6-like

    See identical proteins and their annotated locations for XP_008294751.1

    UniProtKB/TrEMBL
    A0A3B5BCC5
    Related
    ENSSPAP00000030591.1, ENSSPAT00000031086.1
    Conserved Domains (4) summary
    sd00031
    Location:33 → 52
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:51 → 91
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:51 → 132
    LRR_8; Leucine rich repeat
    cl00490
    Location:186 → 530
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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