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LOC103363601 IKAROS family zinc finger 5 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103363601, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103363601
Gene description
IKAROS family zinc finger 5
See related
Ensembl:ENSSPAG00000015358
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Also known as
ikzf5
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578404.1 (42559..45858, complement)

NW_007578404.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 9b Neighboring gene phosphoseryl-tRNA kinase Neighboring gene acyl-CoA dehydrogenase short/branched chain Neighboring gene H6 family homeobox 3 Neighboring gene BUB3 mitotic checkpoint protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578404 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein Pegasus

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578404.1 Reference Stegastes_partitus-1.0.2

    Range
    42559..45858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008290432.1 → XP_008288654.1  zinc finger protein Pegasus

    UniProtKB/TrEMBL
    A0A3B5ARD7
    Related
    ENSSPAP00000020339.1, ENSSPAT00000020653.1
    Conserved Domains (3) summary
    COG5048
    Location:111 → 395
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:87 → 107
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:127 → 151
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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