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LOC103362884 midline 1 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103362884, updated on 31-Jan-2024

Summary

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Gene symbol
LOC103362884
Gene description
midline 1
See related
Ensembl:ENSSPAG00000007457
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Also known as
mid1
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578344.1 (189290..238135)

NW_007578344.1Genomic Context describing neighboring genes Neighboring gene MSL complex subunit 3 Neighboring gene Rho GTPase activating protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578344 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Midline-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578344.1 Reference Stegastes_partitus-1.0.2

    Range
    189290..238135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008289402.1 → XP_008287624.1  E3 ubiquitin-protein ligase Midline-1

    UniProtKB/TrEMBL
    A0A3B4ZNL0, A0A9Y4N751
    Related
    ENSSPAP00000009810.1, ENSSPAT00000009986.1
    Conserved Domains (6) summary
    smart00336
    Location:135 → 180
    BBOX; B-Box-type zinc finger
    cd00021
    Location:195 → 232
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00063
    Location:415 → 501
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00162
    Location:9 → 63
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cl02614
    Location:505 → 681
    SPRY; SPRY domain
    cl23765
    Location:239 → 364
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

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