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hnf1ba HNF1 homeobox Ba [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103362659, updated on 11-Mar-2024

Summary

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Gene symbol
hnf1ba
Gene description
HNF1 homeobox Ba
See related
Ensembl:ENSSPAG00000022581
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Also known as
hnf1b
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578322.1 (301485..317717)

NW_007578322.1Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 1a Neighboring gene dynein, light chain, LC8-type 2a Neighboring gene synergin, gamma

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578322 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in insulin secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in liver development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pancreas development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 1-beta
Names
HNF1 homeobox B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578322.1 Reference Stegastes_partitus-1.0.2

    Range
    301485..317717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008289069.1 → XP_008287291.1  hepatocyte nuclear factor 1-beta

    UniProtKB/TrEMBL
    A0A3B5BAS4, A0A9Y4MYQ6
    Related
    ENSSPAP00000030140.1, ENSSPAT00000030632.1
    Conserved Domains (3) summary
    cd00086
    Location:245 → 318
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04812
    Location:327 → 544
    HNF-1B_C; Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
    pfam04814
    Location:12 → 185
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N terminus
Nucleotide Protein
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