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hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103362451, updated on 11-Mar-2024

Summary

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Gene symbol
hmgcs1
Gene description
3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)
See related
Ensembl:ENSSPAG00000014994
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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See hmgcs1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578306.1 (274658..288091)

NW_007578306.1Genomic Context describing neighboring genes Neighboring gene decapping mRNA 2 Neighboring gene YTH domain containing 2 Neighboring gene talin 1 Neighboring gene tropomyosin 2 (beta)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578306 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxymethylglutaryl-CoA synthase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578306.1 Reference Stegastes_partitus-1.0.2

    Range
    274658..288091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008288810.1 → XP_008287032.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic

    UniProtKB/TrEMBL
    A0A3B5AHK7
    Related
    ENSSPAP00000019901.1, ENSSPAT00000020199.1
    Conserved Domains (3) summary
    TIGR01833
    Location:13 → 470
    HMG-CoA-S_euk; 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade
    pfam01154
    Location:16 → 186
    HMG_CoA_synt_N; Hydroxymethylglutaryl-coenzyme A synthase N terminal
    pfam08540
    Location:187 → 470
    HMG_CoA_synt_C; Hydroxymethylglutaryl-coenzyme A synthase C terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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