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pipox pipecolic acid oxidase [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103355166, updated on 11-Mar-2024

Summary

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Gene symbol
pipox
Gene description
pipecolic acid oxidase
See related
Ensembl:ENSSPAG00000011687
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577866.1 (661326..701315)

NW_007577866.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 12b Neighboring gene seizure related 6 homolog b Neighboring gene myosin XVIIIA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007577866 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-pipecolate oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sarcosine oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-lysine catabolic process to acetyl-CoA via L-pipecolate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal sarcosine oxidase
Names
pipecolic acid and sarcosine oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007577866.1 Reference Stegastes_partitus-1.0.2

    Range
    661326..701315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008278857.1 → XP_008277079.1  peroxisomal sarcosine oxidase

    UniProtKB/TrEMBL
    A0A3B5A2M9
    Related
    ENSSPAP00000015498.1, ENSSPAT00000015749.1
    Conserved Domains (2) summary
    TIGR01377
    Location:7 → 386
    soxA_mon; sarcosine oxidase, monomeric form
    cl21454
    Location:7 → 67
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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