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LOC103353313 BCL6 corepressor like 1 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103353313, updated on 31-Jan-2024

Summary

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Gene symbol
LOC103353313
Gene description
BCL6 corepressor like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Also known as
bcorl1
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577733.1 (775108..784637)

NW_007577733.1Genomic Context describing neighboring genes Neighboring gene cleavage stimulation factor, 3' pre-RNA, subunit 2 Neighboring gene BCL6 corepressor-like 1 Neighboring gene MID1 interacting protein 1, like Neighboring gene tetraspanin 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007577733 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCL-6 corepressor-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007577733.1 Reference Stegastes_partitus-1.0.2

    Range
    775108..784637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008276232.1 → XP_008274454.1  BCL-6 corepressor-like protein 1

    UniProtKB/TrEMBL
    A0A9Y4MV34
    Conserved Domains (4) summary
    cd00204
    Location:140 → 249
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:150 → 241
    Ank_2; Ankyrin repeats (3 copies)
    pfam16553
    Location:323 → 439
    PUFD; BCORL-PCGF1-binding domain
    sd00045
    Location:146 → 177
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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