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pcdh19 protocadherin 19 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103353252, updated on 11-Mar-2024

Summary

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Gene symbol
pcdh19
Gene description
protocadherin 19
See related
Ensembl:ENSSPAG00000010253
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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See pcdh19 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577733.1 (1491196..1568021)

NW_007577733.1Genomic Context describing neighboring genes Neighboring gene E74-like ETS transcription factor 1 Neighboring gene tenomodulin Neighboring gene uncharacterized LOC103353260 Neighboring gene diaphanous-related formin 2 Neighboring gene glycine receptor, alpha 4a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007577733 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007577733.1 Reference Stegastes_partitus-1.0.2

    Range
    1491196..1568021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008276134.1 → XP_008274356.1  protocadherin-19

    UniProtKB/TrEMBL
    A0A3B4ZX88
    Related
    ENSSPAP00000013533.1, ENSSPAT00000013760.1
    Conserved Domains (2) summary
    cd11304
    Location:243 → 343
    Cadherin_repeat; Cadherin tandem repeat domain
    cl09101
    Location:28 → 107
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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