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SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [ Eptesicus fuscus (big brown bat) ]

Gene ID: 103289081, updated on 30-Mar-2024

Summary

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Gene symbol
SMARCE1
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Eptesicus fuscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Eptesicus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current DD_ASM_mEF_20220401 (GCF_027574615.1) 20 NC_072492.1 (43568319..43585976, complement)
101 previous assembly EptFus1.0 (GCF_000308155.1) Unplaced Scaffold NW_007370652.1 (46932181..46951098, complement)

Chromosome 20 - NC_072492.1Genomic Context describing neighboring genes Neighboring gene tensin 4 Neighboring gene C-C motif chemokine receptor 7 Neighboring gene uncharacterized LOC114233351 Neighboring gene U6 spliceosomal RNA Neighboring gene keratin 222

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027574615.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DD_ASM_mEF_20220401

Genomic

  1. NC_072492.1 Reference DD_ASM_mEF_20220401

    Range
    43568319..43585976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028153111.2 → XP_028008912.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

    Conserved Domains (2) summary
    PTZ00121
    Location:249 → 357
    PTZ00121; MAEBL; Provisional
    cd01390
    Location:91 → 152
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_008144920.3 → XP_008143142.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

    Conserved Domains (2) summary
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    cl21478
    Location:283 → 336
    ATP-synt_B; ATP synthase B/B' CF(0)
Nucleotide Protein
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