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EBF2 EBF transcription factor 2 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103269258, updated on 11-Mar-2024

Summary

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Gene symbol
EBF2
Gene description
EBF transcription factor 2
See related
Ensembl:ENSTSYG00000019489
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007253240.1 (76231..284298)

NW_007253240.1Genomic Context describing neighboring genes Neighboring gene cell division cycle associated 2 Neighboring gene potassium channel tetramerization domain containing 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007253240 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor COE2
Names
early B cell factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007253240.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    76231..284298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008066841.1 → XP_008065032.1  transcription factor COE2 isoform X2

    UniProtKB/TrEMBL
    A0A1U7UIB4
    Conserved Domains (3) summary
    cd01175
    Location:261 → 345
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:20 → 246
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:346 → 389
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  2. XM_008066840.1 → XP_008065031.1  transcription factor COE2 isoform X1

    UniProtKB/TrEMBL
    A0A1U7UGP6
    Conserved Domains (3) summary
    cd01175
    Location:269 → 353
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:20 → 246
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:354 → 397
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  3. XM_008066843.1 → XP_008065034.1  transcription factor COE2 isoform X4

    See identical proteins and their annotated locations for XP_008065034.1

    UniProtKB/TrEMBL
    A0A1U7TYF3
    Conserved Domains (3) summary
    cd01175
    Location:253 → 337
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:20 → 246
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:338 → 381
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  4. XM_008066842.1 → XP_008065033.1  transcription factor COE2 isoform X3

    UniProtKB/TrEMBL
    A0A1U7U8G6
    Related
    ENSTSYP00000013649.2, ENSTSYT00000019371.2
    Conserved Domains (3) summary
    cd01175
    Location:253 → 337
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:20 → 246
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:338 → 381
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain

  5. XM_008066844.1 → XP_008065035.1  transcription factor COE2 isoform X5

    UniProtKB/TrEMBL
    A0A1U7U4N0
    Conserved Domains (3) summary
    cd01175
    Location:230 → 314
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    cl17007
    Location:20 → 223
    COE_DBD; Colier/Olf/Early B-cell factor (EBF) DNA Binding Domain
    pfam16423
    Location:315 → 358
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
Nucleotide Protein
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