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WDTC1 WD and tetratricopeptide repeats 1 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103262705, updated on 11-Mar-2024

Summary

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Gene symbol
WDTC1
Gene description
WD and tetratricopeptide repeats 1
See related
Ensembl:ENSTSYG00000028104
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007248694.1 (884136..969122, complement)

NW_007248694.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin like 1 Neighboring gene transmembrane protein 222 Neighboring gene mitochondrial import receptor subunit TOM5 homolog pseudogene Neighboring gene putative dispanin subfamily A member 2d

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007248694 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD and tetratricopeptide repeats protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007248694.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    884136..969122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021713522.1 → XP_021569197.1  WD and tetratricopeptide repeats protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0E2T4
    Conserved Domains (4) summary
    sd00006
    Location:369 → 393
    TPR; TPR repeat [structural motif]
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl26005
    Location:371 → 441
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

  2. XM_008060348.2 → XP_008058539.1  WD and tetratricopeptide repeats protein 1 isoform X1

    See identical proteins and their annotated locations for XP_008058539.1

    UniProtKB/TrEMBL
    A0A1U7TES8
    Conserved Domains (7) summary
    COG2319
    Location:41 → 215
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:370 → 394
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:400 → 434
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:370 → 434
    TPR_11; TPR repeat
    pfam13432
    Location:406 → 471
    TPR_16; Tetratricopeptide repeat
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_008060349.2 → XP_008058540.1  WD and tetratricopeptide repeats protein 1 isoform X1

    See identical proteins and their annotated locations for XP_008058540.1

    UniProtKB/TrEMBL
    A0A1U7TES8
    Related
    ENSTSYP00000024308.1, ENSTSYT00000046203.1
    Conserved Domains (7) summary
    COG2319
    Location:41 → 215
    WD40; WD40 repeat [General function prediction only]
    sd00006
    Location:370 → 394
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:400 → 434
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:370 → 434
    TPR_11; TPR repeat
    pfam13432
    Location:406 → 471
    TPR_16; Tetratricopeptide repeat
    sd00039
    Location:51 → 88
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:34 → 163
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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