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DDX49 DEAD-box helicase 49 [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103260829, updated on 11-Mar-2024

Summary

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Gene symbol
DDX49
Gene description
DEAD-box helicase 49
See related
Ensembl:ENSTSYG00000028117
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007033879.1 (10041..17611)

NW_007033879.1Genomic Context describing neighboring genes Neighboring gene homer scaffold protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007033879 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007033879.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    10041..17611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008058486.2 → XP_008056677.1  probable ATP-dependent RNA helicase DDX49 isoform X1

    UniProtKB/TrEMBL
    A0A1U7TUB9
    Related
    ENSTSYP00000020919.1, ENSTSYT00000035823.1
    Conserved Domains (4) summary
    COG0513
    Location:1 → 468
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:218 → 351
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:4 → 206
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    cl19511
    Location:363 → 454
    DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)

  2. XM_008058478.2 → XP_008056669.1  probable ATP-dependent RNA helicase DDX49 isoform X2

    UniProtKB/TrEMBL
    A0A1U7T9D6
    Conserved Domains (4) summary
    PRK11192
    Location:4 → 440
    PRK11192; ATP-dependent RNA helicase SrmB; Provisional
    cd00268
    Location:4 → 206
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:231 → 342
    Helicase_C; Helicase conserved C-terminal domain
    cl19511
    Location:339 → 429
    DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
Nucleotide Protein
Heading Accession and Version

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