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SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103240044, updated on 11-Mar-2024

Summary

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Gene symbol
SYNCRIP
Gene description
synaptotagmin binding cytoplasmic RNA interacting protein
See related
Ensembl:ENSCSAG00000017365
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666040.1 (186465592..186501124, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 13 NC_023654.1 (10280627..10316690, complement)

NW_023666040.1Genomic Context describing neighboring genes Neighboring gene translationally-controlled tumor protein-like Neighboring gene 5'-nucleotidase ecto Neighboring gene sorting nexin 14 Neighboring gene pyruvate kinase PKM-like Neighboring gene small nucleolar RNA SNORD50 Neighboring gene small nucleolar RNA SNORD50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 5'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CRD-mediated mRNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CRD-mediated mRNA stability complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein Q

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666040.1 Reference Vero_WHO_p1.0

    Range
    186465592..186501124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008006525.2 → XP_008004716.1  heterogeneous nuclear ribonucleoprotein Q isoform X7

    See identical proteins and their annotated locations for XP_008004716.1

    Conserved Domains (1) summary
    TIGR01648
    Location:5 → 459
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  2. XM_008006523.2 → XP_008004714.1  heterogeneous nuclear ribonucleoprotein Q isoform X4

    See identical proteins and their annotated locations for XP_008004714.1

    UniProtKB/TrEMBL
    A0A0D9RXQ9
    Related
    ENSCSAP00000013398.1
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 557
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  3. XM_008006521.2 → XP_008004712.1  heterogeneous nuclear ribonucleoprotein Q isoform X3

    See identical proteins and their annotated locations for XP_008004712.1

    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 592
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  4. XM_008006520.2 → XP_008004711.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    See identical proteins and their annotated locations for XP_008004711.1

    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 592
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  5. XM_008006524.2 → XP_008004715.1  heterogeneous nuclear ribonucleoprotein Q isoform X5

    See identical proteins and their annotated locations for XP_008004715.1

    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 553
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  6. XM_008006522.2 → XP_008004713.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

    See identical proteins and their annotated locations for XP_008004713.1

    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 615
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  7. XM_008006519.2 → XP_008004710.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

    See identical proteins and their annotated locations for XP_008004710.1

    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 615
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  8. XM_008006526.2 → XP_008004717.1  heterogeneous nuclear ribonucleoprotein Q isoform X6

    See identical proteins and their annotated locations for XP_008004717.1

    Conserved Domains (1) summary
    TIGR01648
    Location:5 → 517
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
Nucleotide Protein
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