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RPGRIP1L RPGRIP1 like [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103232995, updated on 11-Mar-2024

Summary

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Gene symbol
RPGRIP1L
Gene description
RPGRIP1 like
See related
Ensembl:ENSCSAG00000005297
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See RPGRIP1L in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666047.1 (36894183..36995212)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 5 NC_023646.1 (39388632..39487223, complement)

NW_023666047.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119627642 Neighboring gene FTO alpha-ketoglutarate dependent dioxygenase Neighboring gene AKT interacting protein Neighboring gene RB transcriptional corepressor like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thromboxane A2 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinal rod cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in photoreceptor connecting cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein fantom

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666047.1 Reference Vero_WHO_p1.0

    Range
    36894183..36995212
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007993313.2 → XP_007991504.1  protein fantom isoform X2

    See identical proteins and their annotated locations for XP_007991504.1

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Conserved Domains (5) summary
    cd00030
    Location:792 → 891
    C2; C2 domain
    pfam06818
    Location:244 → 445
    Fez1; Fez1
    pfam10482
    Location:338 → 459
    CtIP_N; Tumour-suppressor protein CtIP N-terminal domain
    pfam11618
    Location:598 → 737
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    cl23720
    Location:214 → 350
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_007993310.2 → XP_007991501.1  protein fantom isoform X1

    See identical proteins and their annotated locations for XP_007991501.1

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Conserved Domains (5) summary
    cd00030
    Location:796 → 895
    C2; C2 domain
    COG0419
    Location:47 → 584
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02168
    Location:201 → 448
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam11618
    Location:602 → 741
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    pfam18111
    Location:1103 → 1266
    RPGR1_C; Retinitis pigmentosa G-protein regulator interacting C-terminal

  3. XM_038008476.1 → XP_037864404.1  protein fantom isoform X5

  4. XM_038008473.1 → XP_037864401.1  protein fantom isoform X1

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Conserved Domains (5) summary
    cd00030
    Location:796 → 895
    C2; C2 domain
    COG0419
    Location:47 → 584
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02168
    Location:201 → 448
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam11618
    Location:602 → 741
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    pfam18111
    Location:1103 → 1266
    RPGR1_C; Retinitis pigmentosa G-protein regulator interacting C-terminal

  5. XM_007993314.2 → XP_007991505.1  protein fantom isoform X3

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Conserved Domains (4) summary
    cd00030
    Location:796 → 895
    C2; C2 domain
    pfam06818
    Location:244 → 449
    Fez1; Fez1
    pfam11618
    Location:602 → 741
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    cl23720
    Location:214 → 350
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  6. XM_007993316.2 → XP_007991507.1  protein fantom isoform X4

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Conserved Domains (4) summary
    cd00030
    Location:743 → 842
    C2; C2 domain
    pfam06818
    Location:244 → 449
    Fez1; Fez1
    pfam11618
    Location:570 → 688
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    cl23720
    Location:214 → 350
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  7. XM_007993312.2 → XP_007991503.1  protein fantom isoform X2

    See identical proteins and their annotated locations for XP_007991503.1

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Related
    ENSCSAP00000001612.1
    Conserved Domains (5) summary
    cd00030
    Location:792 → 891
    C2; C2 domain
    pfam06818
    Location:244 → 445
    Fez1; Fez1
    pfam10482
    Location:338 → 459
    CtIP_N; Tumour-suppressor protein CtIP N-terminal domain
    pfam11618
    Location:598 → 737
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    cl23720
    Location:214 → 350
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  8. XM_038008475.1 → XP_037864403.1  protein fantom isoform X5

  9. XM_007993311.2 → XP_007991502.1  protein fantom isoform X1

    See identical proteins and their annotated locations for XP_007991502.1

    UniProtKB/TrEMBL
    A0A0D9QZ23
    Conserved Domains (5) summary
    cd00030
    Location:796 → 895
    C2; C2 domain
    COG0419
    Location:47 → 584
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02168
    Location:201 → 448
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam11618
    Location:602 → 741
    C2-C2_1; First C2 domain of RPGR-interacting protein 1
    pfam18111
    Location:1103 → 1266
    RPGR1_C; Retinitis pigmentosa G-protein regulator interacting C-terminal
Nucleotide Protein
Heading Accession and Version

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