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LRRC20 leucine rich repeat containing 20 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103216055, updated on 11-Mar-2024

Summary

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Gene symbol
LRRC20
Gene description
leucine rich repeat containing 20
See related
Ensembl:ENSCSAG00000008285
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666048.1 (21663970..21754417)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 9 NC_023650.1 (60915990..61015367)

NW_023666048.1Genomic Context describing neighboring genes Neighboring gene nodal growth differentiation factor Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 Neighboring gene uncharacterized LOC119627924 Neighboring gene neuropeptide FF receptor 1 Neighboring gene interferon alpha-inducible protein 27, mitochondrial-like Neighboring gene inorganic pyrophosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666048.1 Reference Vero_WHO_p1.0

    Range
    21663970..21754417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038009111.1 → XP_037865039.1  leucine-rich repeat-containing protein 20 isoform X4

  2. XM_007963173.2 → XP_007961364.1  leucine-rich repeat-containing protein 20 isoform X3

    See identical proteins and their annotated locations for XP_007961364.1

    Conserved Domains (2) summary
    PLN03150
    Location:39 → 110
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:28 → 48
    LRR_1; leucine-rich repeat [structural motif]

  3. XM_007963170.2 → XP_007961361.1  leucine-rich repeat-containing protein 20 isoform X1

    See identical proteins and their annotated locations for XP_007961361.1

    UniProtKB/TrEMBL
    A0A0D9R7F5
    Related
    ENSCSAP00000004544.1
    Conserved Domains (3) summary
    PRK15370
    Location:7 → 184
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00031
    Location:76 → 98
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:26 → 47
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_007963176.2 → XP_007961367.1  leucine-rich repeat-containing protein 20 isoform X5

    See identical proteins and their annotated locations for XP_007961367.1

    Conserved Domains (2) summary
    PLN03150
    Location:20 → 91
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:7 → 29
    LRR_1; leucine-rich repeat [structural motif]

  5. XM_038009109.1 → XP_037865037.1  leucine-rich repeat-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A0D9R7F5
    Conserved Domains (3) summary
    PRK15370
    Location:7 → 184
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00031
    Location:76 → 98
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:26 → 47
    LRR_RI; leucine-rich repeat [structural motif]

  6. XM_038009110.1 → XP_037865038.1  leucine-rich repeat-containing protein 20 isoform X3

    Conserved Domains (2) summary
    PLN03150
    Location:39 → 110
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:28 → 48
    LRR_1; leucine-rich repeat [structural motif]

  7. XM_038009112.1 → XP_037865040.1  leucine-rich repeat-containing protein 20 isoform X5

    Conserved Domains (2) summary
    PLN03150
    Location:20 → 91
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:7 → 29
    LRR_1; leucine-rich repeat [structural motif]

  8. XM_038009114.1 → XP_037865042.1  leucine-rich repeat-containing protein 20 isoform X5

    Conserved Domains (2) summary
    PLN03150
    Location:20 → 91
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:7 → 29
    LRR_1; leucine-rich repeat [structural motif]

  9. XM_038009113.1 → XP_037865041.1  leucine-rich repeat-containing protein 20 isoform X5

    Conserved Domains (2) summary
    PLN03150
    Location:20 → 91
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:7 → 29
    LRR_1; leucine-rich repeat [structural motif]

  10. XM_007963172.2 → XP_007961363.1  leucine-rich repeat-containing protein 20 isoform X2

    See identical proteins and their annotated locations for XP_007961363.1

    Conserved Domains (3) summary
    cd00116
    Location:52 → 135
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:52 → 74
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:74 → 132
    LRR_8; Leucine rich repeat

  11. XM_007963175.2 → XP_007961366.1  leucine-rich repeat-containing protein 20 isoform X5

    See identical proteins and their annotated locations for XP_007961366.1

    Conserved Domains (2) summary
    PLN03150
    Location:20 → 91
    PLN03150; hypothetical protein; Provisional
    sd00031
    Location:7 → 29
    LRR_1; leucine-rich repeat [structural motif]
Nucleotide Protein
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