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CRNKL1 crooked neck pre-mRNA splicing factor 1 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103215154, updated on 11-Mar-2024

Summary

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Gene symbol
CRNKL1
Gene description
crooked neck pre-mRNA splicing factor 1
See related
Ensembl:ENSCSAG00000011434
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666078.1 (3838825..3857376, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 2 NC_023643.1 (49052304..49070600, complement)

NW_023666078.1Genomic Context describing neighboring genes Neighboring gene Ras and Rab interactor 2 Neighboring gene N-alpha-acetyltransferase 20, NatB catalytic subunit Neighboring gene cilia and flagella associated protein 61 Neighboring gene uncharacterized LOC119622294 Neighboring gene INSM transcriptional repressor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crooked neck-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666078.1 Reference Vero_WHO_p1.0

    Range
    3838825..3857376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007961431.2 → XP_007959622.1  crooked neck-like protein 1

    See identical proteins and their annotated locations for XP_007959622.1

    UniProtKB/TrEMBL
    A0A0D9RG97
    Related
    ENSCSAP00000007636.1
    Conserved Domains (4) summary
    pfam02184
    Location:196 → 227
    HAT; HAT (Half-A-TPR) repeat
    sd00006
    Location:84 → 109
    TPR; TPR repeat [structural motif]
    cl26712
    Location:64 → 195
    U3_assoc_6; U3 small nucleolar RNA-associated protein 6
    cl26993
    Location:318 → 527
    Suf; Suppressor of forked protein (Suf)
Nucleotide Protein
Heading Accession and Version

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