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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Orycteropus afer afer ]

Gene ID: 103210801, updated on 11-Mar-2024

Summary

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Gene symbol
CTR9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Orycteropus afer afer (sub-species: afer)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tubulidentata; Orycteropodidae; Orycteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current OryAfe1.0 (GCF_000298275.1) Unplaced Scaffold NW_006921601.1 (7722458..7770555)

NW_006921601.1Genomic Context describing neighboring genes Neighboring gene lymphatic vessel endothelial hyaluronan receptor 1 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene small nucleolar RNA SNORD97 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene zinc finger BED-type containing 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006921601 Unplaced Scaffold Reference OryAfe1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Orycteropus afer afer Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OryAfe1.0 Primary Assembly

Genomic

  1. NW_006921601.1 Reference OryAfe1.0 Primary Assembly

    Range
    7722458..7770555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007956724.1 → XP_007954915.1  RNA polymerase-associated protein CTR9 homolog

    UniProtKB/TrEMBL
    A0A8B7B410
    Conserved Domains (6) summary
    TIGR02795
    Location:274 → 384
    tol_pal_ybgF; tol-pal system protein YbgF
    sd00006
    Location:465 → 489
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:165 → 228
    TPR_11; TPR repeat
    pfam13424
    Location:462 → 527
    TPR_12; Tetratricopeptide repeat
    pfam14797
    Location:1003 → 1125
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15315
    Location:987 → 1078
    FRG2; Facioscapulohumeral muscular dystrophy candidate 2
Nucleotide Protein
Heading Accession and Version

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