These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001220765.1 → NP_001207694.1 DNA-binding protein Ikaros isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (2, also known as Ik-x) missing an internal protein segment compared to isoform 1. This isoform contains requisite three N-terminal zinc finger motifs for high affinity DNA binding (PMID:11489963).
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Related
- ENSP00000352123, OTTHUMP00000208888, ENST00000359197, OTTHUMT00000342243
- Conserved Domains (1) summary
-
- pfam13465
Location:132 – 156
Blast Score: 98
- zf-H2C2_2; Zinc-finger double domain
-
NM_001220766.1 → NP_001207695.1 DNA-binding protein Ikaros isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame coding exon in the 5' region compared to variant 1. This results in a shorter isoform (3, also known as Ik-2) missing an internal protein segment compared to isoform 1. This isoform is localized in the nucleus, and contains requisite three N-terminal zinc finger motifs for high affinity DNA binding (PMID:9892693).
- Source sequence(s)
-
AK303586, BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Related
- ENSP00000342750, ENST00000343574
- Conserved Domains (2) summary
-
- pfam13465
Location:72 – 97
Blast Score: 89
- zf-H2C2_2; Zinc-finger double domain
- cl15478
Location:59 – 80
Blast Score: 75
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001220767.1 → NP_001207696.1 DNA-binding protein Ikaros isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an in-frame coding exon in the 5' region, and uses an alternate in-frame donor splice site at another coding exon compared to variant 1. This results in a shorter isoform (4, also known as Ik-2(del)) missing two internal protein segments compared to isoform 1. This isoform contains requisite three N-terminal zinc finger motifs for high affinity DNA binding (PMID:9892693).
- Source sequence(s)
-
AK303586, BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Conserved Domains (2) summary
-
- pfam13465
Location:72 – 97
Blast Score: 89
- zf-H2C2_2; Zinc-finger double domain
- cl15478
Location:59 – 80
Blast Score: 75
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001220768.1 → NP_001207697.1 DNA-binding protein Ikaros isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks two consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (5, also known as Ik-3) missing an internal protein segment compared to isoform 1. This isoform contains requisite three N-terminal zinc finger motifs for high affinity DNA binding.
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Related
- ENSP00000349928, ENST00000357364
- Conserved Domains (1) summary
-
- pfam13465
Location:132 – 156
Blast Score: 97
- zf-H2C2_2; Zinc-finger double domain
-
NM_001220769.1 → NP_001207698.1 DNA-binding protein Ikaros isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks two in-frame coding exons compared to variant 1. This results in a shorter isoform (6, also known as Ik-4) missing two internal protein segments compared to isoform 1. This isoform contains only two N-terminal zinc finger motifs, and represents a non-DNA-binding, dominant negative isoform (PMID:9892693).
- Source sequence(s)
-
AK303586, BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Conserved Domains (2) summary
-
- pfam13465
Location:72 – 97
Blast Score: 91
- zf-H2C2_2; Zinc-finger double domain
- cl15478
Location:59 – 80
Blast Score: 76
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001220770.1 → NP_001207699.1 DNA-binding protein Ikaros isoform 7
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks two in-frame coding exons, and uses an alternate in-frame donor splice site at another coding exon compared to variant 1. This results in a shorter isoform (7, also known as Ik-4(del)) missing three internal protein segments compared to isoform 1. This isoform contains only two N-terminal zinc finger motifs, and represents a non-DNA-binding, dominant negative isoform (PMID:9892693).
- Source sequence(s)
-
AK303586, BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Conserved Domains (2) summary
-
- pfam13465
Location:72 – 97
Blast Score: 90
- zf-H2C2_2; Zinc-finger double domain
- cl15478
Location:59 – 80
Blast Score: 76
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001220771.1 → NP_001207700.1 DNA-binding protein Ikaros isoform 8
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) lacks three consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (8, also known as Ik-5) missing an internal protein segment compared to isoform 1. This isoform contains only one N-terminal zinc finger motif, and represents a non-DNA-binding, dominant negative isoform.
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Related
- ENSP00000342485, ENST00000349824
-
NM_001220772.1 → NP_001207701.1 DNA-binding protein Ikaros isoform 9
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) lacks four consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (9, also known as Ik-6) missing an internal protein segment compared to isoform 1. This isoform contains no N-terminal zinc finger motif, is localized in the cytoplasm, and functions as a non-DNA-binding, dominant negative isoform (PMIDs:12937159, 10463586).
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
-
NM_001220773.1 → NP_001207702.1 DNA-binding protein Ikaros isoform 10
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) lacks two consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (10, also known as Ik-7) missing an internal protein segment compared to isoform 1. This isoform contains only one N-terminal zinc finger motif, and represents a non-DNA-binding, dominant negative isoform (PMID:9892693).
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
-
NM_001220774.1 → NP_001207703.1 DNA-binding protein Ikaros isoform 11
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) lacks two consecutive in-frame coding exons, and uses an alternate in-frame donor splice site at another coding exon compared to variant 1. This results in a shorter isoform (11, also known as Ik-7(del)) missing two internal protein segments compared to isoform 1. This isoform contains only one N-terminal zinc finger motif, and represents a non-DNA-binding, dominant negative isoform (PMID:9892693).
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
-
NM_001220775.1 → NP_001207704.1 DNA-binding protein Ikaros isoform 12
Status: REVIEWED
- Description
- Transcript Variant: This variant (12) lacks three consecutive in-frame coding exons compared to variant 1. This results in a shorter isoform (12, also known as Ik-8) missing an internal protein segment compared to isoform 1. This isoform contains no N-terminal zinc finger motif, and represents a non-DNA-binding, dominant negative isoform (PMID:9892693).
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
-
NM_001220776.1 → NP_001207705.1 DNA-binding protein Ikaros isoform 13
Status: REVIEWED
- Description
- Transcript Variant: This variant (13) lacks three consecutive in-frame coding exons, and uses an alternate in-frame donor splice site at another coding exon compared to variant 1. This results in a shorter isoform (13, also known as Ik-8(del)) missing two internal protein segments compared to isoform 1. This isoform contains no N-terminal zinc finger motif, and represents a non-DNA-binding, dominant negative isoform (PMID:9892693).
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
-
NM_006060.4 → NP_006051.1 DNA-binding protein Ikaros isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1, also known as Ik-1). This isoform contains four N-terminal zinc finger motifs, binds DNA, and is localized in the nucleus.
- Source sequence(s)
-
BC018349, BC075820, BI767330, CA447462, DA944555, U40462
- UniProtKB/Swiss-Prot
-
Q13422
- Related
- ENSP00000331614, OTTHUMP00000208887, ENST00000331340, OTTHUMT00000342242
- Conserved Domains (2) summary
-
- COG5048
Location:143 – 405
Blast Score: 84
- COG5048; FOG: Zn-finger [General function prediction only]
- pfam13465
Location:132 – 156
Blast Score: 96
- zf-H2C2_2; Zinc-finger double domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000007.13 Reference GRCh37.p5 Primary Assembly
- Range
- 50344378..50367358
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000139.1 Alternate HuRef
- Range
- 50224730..50247709
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CRA_TCAGchr7v2
Genomic
-
AC_000068.1 Alternate CRA_TCAGchr7v2
- Range
- 50381631..50478870
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)