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LOC103188899 small nuclear ribonucleoprotein F [ Callorhinchus milii (elephant shark) ]

Gene ID: 103188899, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103188899
Gene description
small nuclear ribonucleoprotein F
See related
Ensembl:ENSCMIG00000015093
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
snrpf
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (25784714..25787872, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890290.1 (377324..379343, complement)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene amidohydrolase domain containing 1 Neighboring gene coiled-coil domain-containing protein 38-like Neighboring gene netrin-4-like Neighboring gene ubiquitin specific peptidase 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein F
Names
small nuclear ribonucleoprotein F-like protein
small nuclear ribonucleoprotein polypeptide F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    25784714..25787872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042335182.1 → XP_042191116.1  small nuclear ribonucleoprotein F

    UniProtKB/TrEMBL
    V9LGH3
    Conserved Domains (1) summary
    cd01722
    Location:6 → 74
    Sm_F; Sm protein F
Nucleotide Protein
Heading Accession and Version

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