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rbm17 RNA binding motif protein 17 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103187919, updated on 11-Mar-2024

Summary

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Gene symbol
rbm17
Gene description
RNA binding motif protein 17
See related
Ensembl:ENSCMIG00000012400
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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See rbm17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (67057391..67071817, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890244.1 (284843..297368)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene protein kinase C, theta Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Neighboring gene proline and serine-rich protein 2 Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene transfer RNA alanine (anticodon GGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    67057391..67071817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042335306.1 → XP_042191240.1  splicing factor 45

    UniProtKB/TrEMBL
    A0A4W3IE98, V9KUP7
    Conserved Domains (2) summary
    pfam01585
    Location:246 → 290
    G-patch; G-patch domain
    cd12647
    Location:318 → 412
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  2. XM_042335304.1 → XP_042191238.1  splicing factor 45

    UniProtKB/TrEMBL
    A0A4W3IE98, V9KUP7
    Conserved Domains (2) summary
    pfam01585
    Location:246 → 290
    G-patch; G-patch domain
    cd12647
    Location:318 → 412
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  3. XM_042335303.1 → XP_042191237.1  splicing factor 45

    UniProtKB/TrEMBL
    A0A4W3IE98, V9KUP7
    Conserved Domains (2) summary
    pfam01585
    Location:246 → 290
    G-patch; G-patch domain
    cd12647
    Location:318 → 412
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  4. XM_042335302.1 → XP_042191236.1  splicing factor 45

    UniProtKB/TrEMBL
    A0A4W3IE98, V9KUP7
    Conserved Domains (2) summary
    pfam01585
    Location:246 → 290
    G-patch; G-patch domain
    cd12647
    Location:318 → 412
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

  5. XM_007907638.2 → XP_007905829.1  splicing factor 45

    UniProtKB/TrEMBL
    A0A4W3IE98, V9KUP7
    Related
    ENSCMIP00000028579.1
    Conserved Domains (2) summary
    pfam01585
    Location:246 → 290
    G-patch; G-patch domain
    cd12647
    Location:318 → 412
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
Nucleotide Protein
Heading Accession and Version

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