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yju2b YJU2 splicing factor homolog B [ Callorhinchus milii (elephant shark) ]

Gene ID: 103187566, updated on 11-Mar-2024

Summary

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Gene symbol
yju2b
Gene description
YJU2 splicing factor homolog B
See related
Ensembl:ENSCMIG00000004795
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
ccdc130
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704770.1 (2587859..2593383, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890233.1 (619112..624885)

NW_024704770.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain containing 83 Neighboring gene general transcription factor IIF, polypeptide 1 Neighboring gene sphingosine 1-phosphate receptor 2 Neighboring gene hemicentin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 130 homolog
Names
coiled-coil domain containing 130
coiled-coil domain-containing protein 130-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704770.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    2587859..2593383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042344743.1 → XP_042200677.1  coiled-coil domain-containing protein 130 homolog

    UniProtKB/TrEMBL
    A0A4W3H1K4, V9KYG0
    Conserved Domains (1) summary
    pfam04502
    Location:9 → 306
    DUF572; Family of unknown function (DUF572)
Nucleotide Protein
Heading Accession and Version

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