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tradd tnfrsf1a-associated via death domain [ Callorhinchus milii (elephant shark) ]

Gene ID: 103185931, updated on 11-Mar-2024

Summary

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Gene symbol
tradd
Gene description
tnfrsf1a-associated via death domain
See related
Ensembl:ENSCMIG00000006972
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704755.1 (13993428..14007524)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890180.1 (1719185..1724206, complement)

NW_024704755.1Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor 4 Neighboring gene F-box and leucine-rich repeat protein 8 Neighboring gene uncharacterized LOC103185929 Neighboring gene guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane receptor protein tyrosine kinase adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tumor necrosis factor receptor superfamily complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor type 1-associated DEATH domain protein
Names
tumor necrosis factor receptor type 1 associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704755.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    13993428..14007524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042340455.1 → XP_042196389.1  tumor necrosis factor receptor type 1-associated DEATH domain protein

    UniProtKB/TrEMBL
    A0A4W3HDP8, V9L4S2
    Conserved Domains (2) summary
    pfam09034
    Location:46 → 152
    TRADD_N; TRADD, N-terminal domain
    cl14633
    Location:221 → 307
    DD; Death Domain Superfamily of protein-protein interaction domains

  2. XM_042340456.1 → XP_042196390.1  tumor necrosis factor receptor type 1-associated DEATH domain protein

    UniProtKB/TrEMBL
    A0A4W3HDP8, V9L4S2
    Conserved Domains (2) summary
    pfam09034
    Location:46 → 152
    TRADD_N; TRADD, N-terminal domain
    cl14633
    Location:221 → 307
    DD; Death Domain Superfamily of protein-protein interaction domains

  3. XM_042340457.1 → XP_042196391.1  tumor necrosis factor receptor type 1-associated DEATH domain protein

    UniProtKB/TrEMBL
    A0A4W3HDP8, V9L4S2
    Conserved Domains (2) summary
    pfam09034
    Location:46 → 152
    TRADD_N; TRADD, N-terminal domain
    cl14633
    Location:221 → 307
    DD; Death Domain Superfamily of protein-protein interaction domains

  4. XM_042340458.1 → XP_042196392.1  tumor necrosis factor receptor type 1-associated DEATH domain protein

    UniProtKB/TrEMBL
    A0A4W3HDP8, V9L4S2
    Conserved Domains (2) summary
    pfam09034
    Location:46 → 152
    TRADD_N; TRADD, N-terminal domain
    cl14633
    Location:221 → 307
    DD; Death Domain Superfamily of protein-protein interaction domains

  5. XM_042340459.1 → XP_042196393.1  tumor necrosis factor receptor type 1-associated DEATH domain protein

    UniProtKB/TrEMBL
    A0A4W3HDP8, V9L4S2
    Conserved Domains (2) summary
    pfam09034
    Location:46 → 152
    TRADD_N; TRADD, N-terminal domain
    cl14633
    Location:221 → 307
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version

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