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lmo3 LIM domain only 3 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103185550, updated on 11-Mar-2024

Summary

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Gene symbol
lmo3
Gene description
LIM domain only 3
See related
Ensembl:ENSCMIG00000011829
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (28230466..28318294)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890172.1 (869098..958433)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene Rho guanine nucleotide exchange factor (GEF) 39 Neighboring gene transfer RNA alanine (anticodon GGC) Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene solute carrier family 15 member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain only protein 3
Names
LIM domain only protein 3-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    28230466..28318294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007904124.2 → XP_007902315.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902315.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  2. XM_007904123.2 → XP_007902314.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902314.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  3. XM_007904121.2 → XP_007902312.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902312.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Related
    ENSCMIP00000027177.1
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  4. XM_007904120.2 → XP_007902311.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902311.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  5. XM_007904119.1 → XP_007902310.1  LIM domain only protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A4W3IAJ5, A0A4W3IIB8
    Related
    ENSCMIP00000027194.1, ENSCMIT00000027629.1
    Conserved Domains (2) summary
    cd09388
    Location:21 → 75
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:85 → 139
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  6. XM_007904127.1 → XP_007902318.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902318.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  7. XM_007904125.2 → XP_007902316.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902316.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  8. XM_007904117.2 → XP_007902308.1  LIM domain only protein 3 isoform X1

    See identical proteins and their annotated locations for XP_007902308.1

    UniProtKB/TrEMBL
    A0A4W3IIB3, A0A4W3IKS0
    Related
    ENSCMIP00000027196.1
    Conserved Domains (2) summary
    cd09388
    Location:24 → 78
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88 → 142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

  9. XM_007904128.2 → XP_007902319.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902319.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  10. XM_007904129.1 → XP_007902320.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902320.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Related
    ENSCMIP00000027201.1, ENSCMIT00000027636.1
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

  11. XM_007904126.1 → XP_007902317.1  LIM domain only protein 3 isoform X3

    See identical proteins and their annotated locations for XP_007902317.1

    UniProtKB/TrEMBL
    A0A4W3IIB8, V9L6I0
    Related
    ENSCMIP00000027203.1, ENSCMIT00000027638.1
    Conserved Domains (2) summary
    cd09388
    Location:13 → 67
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:77 → 131
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Nucleotide Protein
Heading Accession and Version

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