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phf2 PHD finger protein 2 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103185036, updated on 11-Mar-2024

Summary

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Gene symbol
phf2
Gene description
PHD finger protein 2
See related
Ensembl:ENSCMIG00000011459
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704753.1 (1510714..1542915, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890160.1 (719531..747022, complement)

NW_024704753.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase domain containing 1a Neighboring gene BARX homeobox 1 Neighboring gene constitutive coactivator of PPAR-gamma-like protein 1 homolog Neighboring gene serine/threonine-protein kinase WNK2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: lysine-specific demethylase phf2
Names
PHD finger protein 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704753.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    1510714..1542915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042339594.1 → XP_042195528.1  LOW QUALITY PROTEIN: lysine-specific demethylase phf2

    UniProtKB/TrEMBL
    A0A4W3IBR8
    Conserved Domains (2) summary
    smart00558
    Location:200 → 259
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15641
    Location:7 → 56
    PHD_PHF2; PHD finger found in lysine-specific demethylase PHF2
Nucleotide Protein
Heading Accession and Version

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