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znf827 zinc finger protein 827 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103182241, updated on 11-Mar-2024

Summary

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Gene symbol
znf827
Gene description
zinc finger protein 827
See related
Ensembl:ENSCMIG00000009036
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (21870579..21939371)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890120.1 (758883..813931, complement)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family E (OABP), member 1 Neighboring gene OTU deubiquitinase 4 Neighboring gene uncharacterized LOC103182270 Neighboring gene metabolism of cobalamin associated A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 827

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    21870579..21939371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042338082.1 → XP_042194016.1  zinc finger protein 827 isoform X1

    UniProtKB/TrEMBL
    A0A4W3HVS9
    Conserved Domains (3) summary
    COG5048
    Location:344 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:815 → 835
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_042338096.1 → XP_042194030.1  zinc finger protein 827 isoform X4

    UniProtKB/TrEMBL
    A0A4W3HWY0
    Conserved Domains (2) summary
    COG5048
    Location:344 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_042338101.1 → XP_042194035.1  zinc finger protein 827 isoform X5

    UniProtKB/TrEMBL
    A0A4W3HWY0
    Conserved Domains (2) summary
    COG5048
    Location:344 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]

  4. XM_042338091.1 → XP_042194025.1  zinc finger protein 827 isoform X3

    UniProtKB/TrEMBL
    A0A4W3HVS9
    Conserved Domains (3) summary
    COG5048
    Location:344 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:735 → 755
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. XM_042338086.1 → XP_042194020.1  zinc finger protein 827 isoform X2

    UniProtKB/TrEMBL
    A0A4W3HVS9
    Conserved Domains (3) summary
    COG5048
    Location:344 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:814 → 834
    ZF_C2H2; C2H2 Zn finger [structural motif]

  6. XM_042338104.1 → XP_042194038.1  zinc finger protein 827 isoform X6

    Conserved Domains (3) summary
    COG5048
    Location:344 → 418
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:815 → 835
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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