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uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103182052, updated on 11-Mar-2024

Summary

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Gene symbol
uba52
Gene description
ubiquitin A-52 residue ribosomal protein fusion product 1
See related
Ensembl:ENSCMIG00000006182
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704762.1 (9238457..9242388, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890117.1 (3504941..3507433, complement)

NW_024704762.1Genomic Context describing neighboring genes Neighboring gene proteinase-activated receptor 3-like Neighboring gene uncharacterized LOC103182099 Neighboring gene protein S100-A1 Neighboring gene KxDL motif containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-60S ribosomal protein L40
Names
ribosomal protein L40-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292943.1 → NP_001279872.1  ubiquitin-60S ribosomal protein L40

    See identical proteins and their annotated locations for NP_001279872.1

    Status: PROVISIONAL

    Source sequence(s)
    JX212585
    UniProtKB/TrEMBL
    K4G045, K4G3A5, K4G4C1, K4G525, K4G7L9, K4G9J6, K4G9R5, K4GB34, K4GBX6, K4GHA8, K4GHF2, K4GHU6, K4GHZ0, K4GI96, K4GID3
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704762.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    9238457..9242388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042342595.1 → XP_042198529.1  ubiquitin-60S ribosomal protein L40 isoform X1

    UniProtKB/TrEMBL
    K4G045, K4G3A5, K4G4C1, K4G525, K4G7L9, K4G9J6, K4G9R5, K4GB34, K4GBX6, K4GHA8, K4GHF2, K4GHU6, K4GHZ0, K4GI96, K4GID3
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01020
    Location:79 → 126
    Ribosomal_L40e; Ribosomal L40e family
Nucleotide Protein
Heading Accession and Version

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