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LOC103181251 DNA-binding protein SATB1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103181251, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103181251
Gene description
DNA-binding protein SATB1
See related
Ensembl:ENSCMIG00000018985
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
satb1
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704743.1 (70399951..70474593, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890109.1 (2549075..2622250)

NW_024704743.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 5 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-binding protein SATB1
Names
SATB homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704743.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    70399951..70474593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007897581.2 → XP_007895772.1  DNA-binding protein SATB1 isoform X3

    See identical proteins and their annotated locations for XP_007895772.1

    UniProtKB/TrEMBL
    A0A4W3KGJ8
    Conserved Domains (4) summary
    smart00389
    Location:550 → 604
    HOX; Homeodomain
    cd11585
    Location:2 → 97
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:424 → 496
    CUT; CUT domain
    pfam16557
    Location:128 → 175
    CUTL; CUT1-like DNA-binding domain of SATB

  2. XM_007897578.2 → XP_007895769.1  DNA-binding protein SATB1 isoform X1

    See identical proteins and their annotated locations for XP_007895769.1

    UniProtKB/TrEMBL
    A0A4W3KGJ8
    Conserved Domains (4) summary
    smart00389
    Location:622 → 676
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:496 → 568
    CUT; CUT domain
    pfam16557
    Location:200 → 247
    CUTL; CUT1-like DNA-binding domain of SATB

  3. XM_007897579.2 → XP_007895770.1  DNA-binding protein SATB1 isoform X1

    See identical proteins and their annotated locations for XP_007895770.1

    UniProtKB/TrEMBL
    A0A4W3KGJ8
    Related
    ENSCMIP00000046100.1
    Conserved Domains (4) summary
    smart00389
    Location:622 → 676
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:496 → 568
    CUT; CUT domain
    pfam16557
    Location:200 → 247
    CUTL; CUT1-like DNA-binding domain of SATB

  4. XM_007897583.2 → XP_007895774.1  DNA-binding protein SATB1 isoform X1

    See identical proteins and their annotated locations for XP_007895774.1

    UniProtKB/TrEMBL
    A0A4W3KGJ8
    Conserved Domains (4) summary
    smart00389
    Location:622 → 676
    HOX; Homeodomain
    cd11585
    Location:74 → 169
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:496 → 568
    CUT; CUT domain
    pfam16557
    Location:200 → 247
    CUTL; CUT1-like DNA-binding domain of SATB

  5. XM_007897582.2 → XP_007895773.1  DNA-binding protein SATB1 isoform X3

    See identical proteins and their annotated locations for XP_007895773.1

    UniProtKB/TrEMBL
    A0A4W3KGJ8
    Conserved Domains (4) summary
    smart00389
    Location:550 → 604
    HOX; Homeodomain
    cd11585
    Location:2 → 97
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:424 → 496
    CUT; CUT domain
    pfam16557
    Location:128 → 175
    CUTL; CUT1-like DNA-binding domain of SATB

  6. XM_007897580.2 → XP_007895771.1  DNA-binding protein SATB1 isoform X2

    UniProtKB/TrEMBL
    A0A4W3KGJ8
    Conserved Domains (4) summary
    smart00389
    Location:618 → 672
    HOX; Homeodomain
    cd11585
    Location:70 → 165
    SATB1_N; N-terminal domain of SATB1 and similar proteins
    pfam02376
    Location:492 → 564
    CUT; CUT domain
    pfam16557
    Location:196 → 243
    CUTL; CUT1-like DNA-binding domain of SATB
Nucleotide Protein
Heading Accession and Version

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