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LOC103180110 type 2 lactosamine alpha-2,3-sialyltransferase [ Callorhinchus milii (elephant shark) ]

Gene ID: 103180110, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103180110
Gene description
type 2 lactosamine alpha-2,3-sialyltransferase
See related
Ensembl:ENSCMIG00000019530
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
st3gal6
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704745.1 (9304686..9337158, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890095.1 (1439908..1478047, complement)

NW_024704745.1Genomic Context describing neighboring genes Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene collagen, type VIII, alpha 1a Neighboring gene jagunal homolog 1a Neighboring gene adhesion G protein-coupled receptor G7, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase
Names
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
type 2 lactosamine alpha-2,3-sialyltransferase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704745.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    9304686..9337158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042334479.1 → XP_042190413.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    V9KHU5
    Conserved Domains (1) summary
    pfam00777
    Location:74 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_042334478.1 → XP_042190412.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    V9KHU5
    Conserved Domains (1) summary
    pfam00777
    Location:74 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_042334480.1 → XP_042190414.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    Conserved Domains (1) summary
    pfam00777
    Location:55 → 312
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_042334477.1 → XP_042190411.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    V9KHU5
    Conserved Domains (1) summary
    pfam00777
    Location:74 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_007895752.2 → XP_007893943.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    See identical proteins and their annotated locations for XP_007893943.1

    UniProtKB/TrEMBL
    V9KHU5
    Related
    ENSCMIP00000047704.1
    Conserved Domains (1) summary
    pfam00777
    Location:74 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_007895755.1 → XP_007893946.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A4W3KIR5
    Related
    ENSCMIP00000047705.1, ENSCMIT00000048377.1
    Conserved Domains (1) summary
    pfam00777
    Location:71 → 328
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_007895757.1 → XP_007893948.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    See identical proteins and their annotated locations for XP_007893948.1

    Conserved Domains (1) summary
    pfam00777
    Location:55 → 312
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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