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csrp1a cysteine and glycine-rich protein 1a [ Callorhinchus milii (elephant shark) ]

Gene ID: 103179106, updated on 11-Mar-2024

Summary

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Gene symbol
csrp1a
Gene description
cysteine and glycine-rich protein 1a
See related
Ensembl:ENSCMIG00000000955
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
csrp1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704760.1 (7319822..7335231, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890086.1 (2915291..2930216)

NW_024704760.1Genomic Context describing neighboring genes Neighboring gene troponin I, slow skeletal muscle Neighboring gene pleckstrin homology-like domain family A member 2 Neighboring gene neuron navigator 3-like Neighboring gene neuron navigator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomere organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine and glycine-rich protein 1a
Names
cysteine and glycine rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001292451.1 → NP_001279380.1  cysteine and glycine-rich protein 1a

    See identical proteins and their annotated locations for NP_001279380.1

    Status: PROVISIONAL

    Source sequence(s)
    JX210680
    UniProtKB/TrEMBL
    A0A4W3GDT5, K4G7T6
    Conserved Domains (2) summary
    cd09403
    Location:119 → 172
    LIM2_CRP; The second LIM domain of Cysteine Rich Protein (CRP)
    cl02475
    Location:8 → 63
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704760.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    7319822..7335231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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